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For travelers searching for affordable flights from Manila to Tokyo flights, FlightsDaddy offers the best deals to suit your travel needs. Whether you’re heading to Japan for business, leisure or a cultural adventure, finding the right airfare is essential. The Manila (MNL) to Tokyo (NRT/HND) route is served by top airlines such as Philippine Airlines, Japan Airlines, All Nippon Airways (ANA), and Cebu Pacific, offering both direct & connecting flights. Booking with FlightsDaddy allows you to access exclusive promotions and discounted fares that may be available only online.

This month discounted airfare from Manila to Tokyo flights Book online

Departure atReturn atAirlineFlight numberAirlineFlightStopsPriceFind tickets
15 September 202622 September 2026Jeju Air7C 2104Jeju AirJeju Air
(7C 2104)		1 Stop464 Tickets from 464
19 September 202625 September 2026Cathay PacificCX 902Cathay PacificCathay Pacific
(CX 902)		1 Stop319 Tickets from 319
20 September 202626 September 2026Cathay PacificCX 974Cathay PacificCathay Pacific
(CX 974)		1 Stop312 Tickets from 312
21 September 202628 September 2026Cathay PacificCX 974Cathay PacificCathay Pacific
(CX 974)		1 Stop317 Tickets from 317
22 September 202627 September 2026Cathay PacificCX 974Cathay PacificCathay Pacific
(CX 974)		1 Stop406 Tickets from 406
23 September 202629 September 2026Philippine AirlinesPR 1841Philippine AirlinesPhilippine Airlines
(PR 1841)		1 Stop453 Tickets from 453
24 September 202630 September 2026Vietnam AirlinesVN 649Vietnam AirlinesVietnam Airlines
(VN 649)		1 Stop403 Tickets from 403
25 September 20261 October 2026Jetstar JapanGK 40Jetstar JapanJetstar Japan
(GK 40)		Direct412 Tickets from 412
26 September 20261 October 2026HK ExpressUO 535HK ExpressHK Express
(UO 535)		1 Stop403 Tickets from 403
27 September 20262 October 2026Cathay PacificCX 902Cathay PacificCathay Pacific
(CX 902)		1 Stop327 Tickets from 327
28 September 20263 October 2026Cathay PacificCX 930Cathay PacificCathay Pacific
(CX 930)		1 Stop321 Tickets from 321
29 September 20264 October 2026Cathay PacificCX 930Cathay PacificCathay Pacific
(CX 930)		1 Stop327 Tickets from 327
30 September 20265 October 2026Cathay PacificCX 906Cathay PacificCathay Pacific
(CX 906)		1 Stop321 Tickets from 321
3 October 202611 October 2026Cathay PacificCX 918Cathay PacificCathay Pacific
(CX 918)		1 Stop319 Tickets from 319
5 October 20269 October 2026Cathay PacificCX 974Cathay PacificCathay Pacific
(CX 974)		1 Stop357 Tickets from 357
6 October 202613 October 2026Cathay PacificCX 974Cathay PacificCathay Pacific
(CX 974)		1 Stop312 Tickets from 312
17 October 202622 October 2026Philippine AirlinesPR 5332Philippine AirlinesPhilippine Airlines
(PR 5332)		Direct345 Tickets from 345
26 October 20268 November 2026Cebu Pacific5J 5056Cebu PacificCebu Pacific
(5J 5056)		1 Stop377 Tickets from 377
29 October 202615 November 2026Cathay PacificCX 904Cathay PacificCathay Pacific
(CX 904)		1 Stop371 Tickets from 371
2 November 202618 November 2026Cebu Pacific5J 5056Cebu PacificCebu Pacific
(5J 5056)		Direct352 Tickets from 352
5 November 202618 November 2026Philippine AirlinesPR 430Philippine AirlinesPhilippine Airlines
(PR 430)		Direct338 Tickets from 338
7 November 202611 November 2026Cathay PacificCX 912Cathay PacificCathay Pacific
(CX 912)		1 Stop328 Tickets from 328
8 November 202622 November 2026Cebu Pacific5J 5054Cebu PacificCebu Pacific
(5J 5054)		1 Stop326 Tickets from 326
12 November 202619 November 2026Cebu Pacific5J 5056Cebu PacificCebu Pacific
(5J 5056)		Direct279 Tickets from 279
15 November 202623 November 2026Jetstar JapanGK 40Jetstar JapanJetstar Japan
(GK 40)		Direct310 Tickets from 310
17 November 20261 December 2026Jetstar JapanGK 40Jetstar JapanJetstar Japan
(GK 40)		Direct266 Tickets from 266
23 November 20262 December 2026Jetstar JapanGK 40Jetstar JapanJetstar Japan
(GK 40)		Direct282 Tickets from 282
2 December 20265 December 2026Jetstar JapanGK 40Jetstar JapanJetstar Japan
(GK 40)		Direct309 Tickets from 309
4 December 20268 December 2026Cebu Pacific5J 5056Cebu PacificCebu Pacific
(5J 5056)		Direct311 Tickets from 311
13 December 202617 December 2026Cebu Pacific5J 5054Cebu PacificCebu Pacific
(5J 5054)		1 Stop291 Tickets from 291
26 December 202631 December 2026Cathay PacificCX 902Cathay PacificCathay Pacific
(CX 902)		1 Stop544 Tickets from 544
30 December 20262 January 2027Cathay PacificCX 904Cathay PacificCathay Pacific
(CX 904)		1 Stop548 Tickets from 548
6 January 202712 January 2027Cathay PacificCX 904Cathay PacificCathay Pacific
(CX 904)		1 Stop340 Tickets from 340
15 January 202728 January 2027Cebu Pacific5J 5056Cebu PacificCebu Pacific
(5J 5056)		Direct244 Tickets from 244
7 February 202713 February 2027Cebu Pacific5J 5056Cebu PacificCebu Pacific
(5J 5056)		Direct248 Tickets from 248
8 February 202714 February 2027Cebu Pacific5J 5056Cebu PacificCebu Pacific
(5J 5056)		Direct242 Tickets from 242
9 February 202714 February 2027Cebu Pacific5J 5056Cebu PacificCebu Pacific
(5J 5056)		Direct245 Tickets from 245
14 February 202720 February 2027Cebu Pacific5J 5056Cebu PacificCebu Pacific
(5J 5056)		Direct260 Tickets from 260
1 March 20277 March 2027Cebu Pacific5J 5056Cebu PacificCebu Pacific
(5J 5056)		Direct249 Tickets from 249
7 March 202713 March 2027Jetstar JapanGK 40Jetstar JapanJetstar Japan
(GK 40)		Direct238 Tickets from 238
21 March 202727 March 2027Jetstar JapanGK 40Jetstar JapanJetstar Japan
(GK 40)		Direct340 Tickets from 340
9 May 202715 May 2027Cebu Pacific5J 5054Cebu PacificCebu Pacific
(5J 5054)		Direct252 Tickets from 252
25 May 202731 May 2027Cebu Pacific5J 5056Cebu PacificCebu Pacific
(5J 5056)		Direct187 Tickets from 187
22 June 202718 July 2027Cebu Pacific5J 5054Cebu PacificCebu Pacific
(5J 5054)		Direct271 Tickets from 271

Book Direct Flights from Manila to Tokyo

Departure atReturn atAirlineFind tickets
19 September 202625 September 2026Jetstar JapanTickets from 383
6 October 202613 October 2026All Nippon AirwaysTickets from 339
12 November 202619 November 2026Cebu PacificTickets from 279

Cheap flights from Manila

DestinationDeparture atReturn atFind tickets
Kalibo23 September 202630 September 2026Tickets from 51
Caticlan8 March 202718 March 2027Tickets from 52
Cebu City3 February 202718 February 2027Tickets from 60
Tacloban22 September 202625 September 2026Tickets from 61
Puerto Princesa11 January 20272 February 2027Tickets from 62
Iloilo12 October 202627 October 2026Tickets from 64
Dumaguete21 February 20273 March 2027Tickets from 71
Tagbilaran7 January 20274 February 2027Tickets from 71
Singapore25 September 202628 September 2026Tickets from 77
Cagayan De Oro19 September 20263 October 2026Tickets from 84
Butuan15 October 202621 October 2026Tickets from 88
Davao City6 November 202622 November 2026Tickets from 88
Laoag8 January 202716 January 2027Tickets from 105
Kaohsiung4 October 202617 October 2026Tickets from 105
Ozamis City30 October 20262 November 2026Tickets from 109
Macau18 September 202620 September 2026Tickets from 113
Pagadian4 October 202612 October 2026Tickets from 126
Denpasar (Bali)17 February 20273 March 2027Tickets from 130
Hong Kong5 November 202610 November 2026Tickets from 132
Nagoya2 April 202710 April 2027Tickets from 133
Mambajao9 November 202611 November 2026Tickets from 138
Del Carmen27 October 20266 November 2026Tickets from 145
Shanghai3 November 202616 November 2026Tickets from 146
Taipei27 September 202610 October 2026Tickets from 146
Bangkok2 February 202717 February 2027Tickets from 147
Busuanga15 February 202723 February 2027Tickets from 149
El Nido6 March 202721 March 2027Tickets from 152
Kuala Lumpur25 May 202731 May 2027Tickets from 155
Ho Chi Minh City26 September 20264 October 2026Tickets from 155
Da Nang15 October 20266 November 2026Tickets from 163
Beijing3 October 202610 October 2026Tickets from 164
City of Angeles6 November 202615 November 2026Tickets from 166
Xiamen21 November 202623 November 2026Tickets from 178
Hanoi21 September 20262 October 2026Tickets from 180
Kota-Kinabalu25 December 202628 December 2026Tickets from 185
Tokyo25 May 202731 May 2027Tickets from 187
Guangzhou16 September 202622 September 2026Tickets from 192
Nha Trang21 September 20262 October 2026Tickets from 193
Chengdu3 November 20267 November 2026Tickets from 198
Shenzhen17 October 202630 October 2026Tickets from 198
Phuket6 October 202613 October 2026Tickets from 200
Phu Quoc7 November 202627 November 2026Tickets from 205
Xian17 September 202613 October 2026Tickets from 210
Jakarta2 October 202612 October 2026Tickets from 211
Bandar Seri Begawan26 November 202628 November 2026Tickets from 217
Harbin14 October 202624 October 2026Tickets from 225
Chongqing3 November 20267 November 2026Tickets from 225
Seoul4 October 20269 October 2026Tickets from 228
Busan20 October 202625 October 2026Tickets from 232
Osaka28 February 20277 March 2027Tickets from 247
Hangzhou6 February 202718 February 2027Tickets from 268
Langkawi20 November 202622 November 2026Tickets from 272
Sandakan8 January 202711 January 2027Tickets from 274
Sanya20 November 20265 December 2026Tickets from 290
Dubai31 December 202611 January 2027Tickets from 313
Vientiane18 January 202721 January 2027Tickets from 314
Naga6 November 202621 November 2026Tickets from 317
Chiang Mai3 November 20269 November 2026Tickets from 322
Chiang Rai11 December 20265 January 2027Tickets from 333
New Delhi6 December 202610 December 2026Tickets from 339
Muscat15 October 202630 October 2026Tickets from 355
Amritsar23 September 202627 September 2026Tickets from 376
Sapporo1 December 20268 December 2026Tickets from 380
Balikpapan8 October 20269 October 2026Tickets from 387
Riyadh3 March 202711 March 2027Tickets from 389
Koror23 September 202628 September 2026Tickets from 394
Sydney5 November 20269 November 2026Tickets from 399
Siem Reap1 December 20268 December 2026Tickets from 402
Vladivostok13 October 202620 October 2026Tickets from 412
Koh Samui9 January 20275 February 2027Tickets from 416
Guilin8 March 202711 March 2027Tickets from 425
Abu Dhabi2 October 20265 October 2026Tickets from 427
Haiphong22 December 202626 December 2026Tickets from 448
Perth20 March 202728 March 2027Tickets from 451
Los Angeles6 October 202620 October 2026Tickets from 453
Colombo8 October 202613 October 2026Tickets from 453
Hagatna16 November 202627 November 2026Tickets from 463
Istanbul22 October 202612 November 2026Tickets from 488
Melbourne18 May 202725 May 2027Tickets from 518
Sharjah6 November 20268 November 2026Tickets from 520
Doha9 October 202612 October 2026Tickets from 536
Moscow22 October 202622 November 2026Tickets from 542
Heihe26 November 20268 December 2026Tickets from 543
Goa17 October 20263 November 2026Tickets from 547
New York1 November 202610 November 2026Tickets from 560
Pattaya8 January 202722 January 2027Tickets from 575
Urumqi19 October 202630 October 2026Tickets from 576
Tashkent29 September 20267 October 2026Tickets from 589
Male22 November 202623 November 2026Tickets from 601
Port Moresby14 October 202618 October 2026Tickets from 605
Amsterdam20 September 202627 September 2026Tickets from 606
Ambon5 October 202627 October 2026Tickets from 619
Saipan1 October 20267 October 2026Tickets from 634
Irkutsk6 March 202718 March 2027Tickets from 646
Almaty2 November 20268 November 2026Tickets from 647
Copenhagen20 October 202627 October 2026Tickets from 655
Barcelona14 October 202628 October 2026Tickets from 682
Rome24 October 202631 October 2026Tickets from 682
Kathmandu30 October 20262 November 2026Tickets from 683
Astana20 November 202627 November 2026Tickets from 687
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